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When you delete a physical folder from within EFT Server, the folder is deleted from EFT Server AND your computer's hard drive. If you want to delete only the reference to the folder in EFT Server, refer to Deleting a Virtual Folder.
To delete a physical folder
In the administration interface, connect to EFT Server and click the Server tab.
In the left pane, right-click the folder you want to delete, then click Delete Folder. A confirmation message appears.
Creating a New Physical Folder
Changing the Name of a Physical Folder
Creating a New Virtual Folder
Deleting a Virtual Folder