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When you delete a virtual folder, you merely delete a pointer, not the actual folder it references. (If you want to delete the physical folder and everything it contains from the hard drive, refer to Deleting a Physical Folder.)
To delete a virtual folder
In the administration interface, connect to EFT Server and click the Server tab.
In the left pane, right-click the folder you want to delete, then click Delete Folder. A confirmation message appears.
Creating a New Virtual Folder
Deleting a Physical Folder
Mapping a Virtual Folder to a Network Drive